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Tag: 2-D CVM

Entropy Trumps All (First Computational for the 2-D CVM)

Entropy Trumps All (First Computational for the 2-D CVM)

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Computational vs. Analytic Results for the 2-D Cluster Variation Method:   Three lessons learned: first computational results for the 2-D Cluster Variation Method, or CVM. The first-results comparisons between analytic predictions and the actual computational results tell us three things: (1) the analytics are a suggestion, not an actual values-prediction, and the further that we go from zero-values for the two enthalpy parameters, the more that the two diverge, (2) topography is important (VERY important), and (3) entropy rules the…

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Filling Out the Phase Space Boundaries – 2-D CVM

Filling Out the Phase Space Boundaries – 2-D CVM

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Configuration Variables Along the Phase Space Boundaries for a 2-D CVM   Last week’s blog showed how we could get x1 for a specific value of epsilon0, by taking the derivative of the free energy and setting it equal to zero. (This works for the special case where epsilon1 is zero, meaning that there is no interaction enthalpy.) Last week, we looked at one case, where epsilon0 = 1.0. This week, we take a range of epsilon0 values and find…

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Obvious, But Useful (Getting the Epsilon-0 Value when the Interaction Enthalpy Is Zero)

Obvious, But Useful (Getting the Epsilon-0 Value when the Interaction Enthalpy Is Zero)

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  This Really Is Kind of Obvious, But …   There’s something very interesting that we can do to obtain values for the epsilon0 parameter. Let’s stay with the case where there is no interaction enthalpy. In that case, we want to find the epsilon0 value that corresponds to the x1 value at a given free energy minimum. Or conversely, given an epsilon0 value, can we identify the x1 where the free energy minimum occurs? Turns out that, for this…

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An Interesting Little Thing about the CVM Entropy (with Code)

An Interesting Little Thing about the CVM Entropy (with Code)

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The 2-D CVM Entropy and Free Energy Minima when the Interaction Enthalpy Is Zero:   Today, we transition from deriving the equations for the Cluster Variation Method (CVM) entropies (both 1-D and 2-D) to looking at how these entropies fit into the overall context of a free energy equation. Let’s start with entropy. The truly important thing about entropy is that it gives shape and order to the universe. Now, this may seem odd to those of us who’ve grown…

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Object-Oriented for the CVM (Continued), and an Oops!

Object-Oriented for the CVM (Continued), and an Oops!

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Why Shifting to the Object-Oriented Coding Approach REALLY IS Important:   Well, I hate having to admit it. Mud on my face; all that. But I made a pretty significant Whoops! back this last winter when I posted a “Verification and Validation” document (hah!) to arXiv.     The Sad Story of My Previous Ineptitude   Well, there’s nothing like hearing about someone else’s screw-up in order to make us feel better about our own life, so here goes. I’d…

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Expressing Total Microstates (Omega) for the 1-D and 2-D CVM – Part 2

Expressing Total Microstates (Omega) for the 1-D and 2-D CVM – Part 2

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Showing How the Omega Equation is Obtained for the 1-D and 2-D CVM – Part 2:   The cluster variation method (CVM) lets us characterize a system in terms of local patterns, and not just the numbers of units in on (A) and off (B) states. It works with a more complex entropy term. The natural question is: How do obtain this more complex entropy? This post continues a discussion begun in the last post, on how we actually get…

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Looking at Friends and Neighbors: A Node’s Point-of-View (2-D Cluster Variation Method)

Looking at Friends and Neighbors: A Node’s Point-of-View (2-D Cluster Variation Method)

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Looking around from a Node’s Point-of-View:   As we move from procedural code to object-oriented Python for a Cluster Variation Method (CVM) grid, our perspective shifts. We now need to look at the world from a node’s point-of-view. It’s a lot like updating one’s relationship status in Facebook – except that after updating our own (node) status, we need to not only update the values for all of our own configuration variables, but then we need to travel around the…

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Figuring Out the Puzzle (in a 2-D CVM Grid)

Figuring Out the Puzzle (in a 2-D CVM Grid)

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The Conundrum – and How to Solve It: We left off last week with a bit of a cliff-hanger; a puzzle with the 2-D CVM. (CVM stands for Cluster Variation Method; it’s a more complex form of a free energy equation that I discussed two weeks ago in this blogpost on The Big, Bad, Scary Free Energy Equation (and New Experimental Results); while not entirely unknown, it’s still not very common yet.) We asked ourselves: which of the two grids…

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2-D Cluster Variation Method: Code V&V

2-D Cluster Variation Method: Code V&V

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New Code (Not Released Yet): V&V the Code Before We Play:   Well, my darling, as you gathered from last week’s post, the world has shifted. Up until now, when we were talking about having a new free energy function to use inside a neural network, we had to do “Gedankenexperiments” (German for “thought experiments”). Now, though, there’s working code – and I so LOVE seeing the numbers and graphs come out; teasing it, playing with it … stroking it…

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Brain Networks and the Cluster Variation Method: Testing a Scale-Free Model

Brain Networks and the Cluster Variation Method: Testing a Scale-Free Model

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Surprising Result Modeling a Simple Scale-Free Brain Network Using the Cluster Variation Method One of the primary research thrusts that I suggested in my recent paper, The Cluster Variation Method: A Primer for Neuroscientists, was that we could use the 2-D Cluster Variation Method (CVM) to model distribution of configuration variables in different brain network topologies. Specifically, I was expecting that the h-value (which measures the interaction enthalpy strength between nodes in a 2-D CVM grid) would change in a…

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